GgaEX6024318 @ galGal3
Exon Skipping
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5728781-5730341:+
Coord C1 exon
chr21:5728781-5728823
Coord A exon
chr21:5729387-5729475
Coord C2 exon
chr21:5730244-5730341
Length
89 bp
Sequences
Splice sites
3' ss Seq
TATCTTTGTATGTTTTCCAGCCC
3' ss Score
8.04
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGCTTGGAATCCTCTTTGCTGTGCTGACTCTGGCAGCTGCAG
Seq A exon
CCCTTGGCTGCGGGGTTCCTGCCTACCCACCTGCTGTGTCTCGAGTTGTTGGAGGGGAAGATGCAAGACCATACAGCTGGCCCTGGCAG
Seq C2 exon
GCCTCTCTTCAATATCAATCAAGTGGTAAATGGTATCACACCTGTGGAGGAACCCTCATTGCAACCAACTGGGTGTTGACAGCTGCACACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568-'0-2,'0-0,1-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=46.7)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTGGAATCCTCTTTGCTGT
R:
GCAGTGTGCAGCTGTCAACA
Band lengths:
135-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]