RnoEX0025266 @ rn6
Exon Skipping
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160402039-160403373:-
Coord C1 exon
chr5:160403322-160403373
Coord A exon
chr5:160402220-160402311
Coord C2 exon
chr5:160402039-160402136
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCACTCCCCTGTCTCCCCAGCCT
3' ss Score
7.96
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
AACACCTGAACCATGTTGGGAATTACGGTCCTCGCTGCCATCCTGGCCTGCG
Seq A exon
CCTCTTGCTGCGGGAACCCCGCCTTCCCACCTAACCTGTCAACCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAACAGCTGGCCTTGGCAG
Seq C2 exon
GTCTCTCTCCAGTACCTCAAGGACGACACATGGAGGCACACCTGTGGGGGAAGTCTCATCACCACCAGCCACGTCCTCACTGCCGCCCACTGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=45.2)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTGAACCATGTTGGGA
R:
GCAGTGAGGACGTGGCTG
Band lengths:
135-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]