BtaEX6069748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53300318-53302109:-
Coord C1 exon
chr16:53302047-53302109
Coord A exon
chr16:53300514-53300605
Coord C2 exon
chr16:53300318-53300415
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCCTGTCTCCCCCAGCCT
3' ss Score
9.96
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ACCTGATTCTGAGCATTCACAACATGTTGGGCATCACGGTCTTCACCACGTTCCTGGCCTATG
Seq A exon
CCTCCAGCTGCGGGGCCCCCATCTTCCAGCCCAACCTATCAGCCCGCGTGGTGGGAGGAGAGGACGCCATTCCCCACAGCTGGCCCTGGCAG
Seq C2 exon
ATCTCCCTCCAGTACCTCAGGGATAACACGTGGAGGCACACCTGTGGCGGCACCCTGATCACCCCCAACCACGTGCTCACAGCTGCCCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=45.2)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGATTCTGAGCATTCACAACA
R:
CAGTGGGCAGCTGTGAGC
Band lengths:
155-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]