HsaEX6028602 @ hg19
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15764935-15767086:+
Coord C1 exon
chr1:15764935-15765000
Coord A exon
chr1:15766796-15766887
Coord C2 exon
chr1:15766989-15767086
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTCCTGTCTCCCCAGCCT
3' ss Score
8.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTCAGCCAGTCCTGAGCACCTAACCATGTTGGGCATCACTGTCCTCGCTGCGCTCTTGGCCTGTG
Seq A exon
CCTCCAGCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCTGGCAG
Seq C2 exon
ATCTCCCTCCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCTCACTGCCGCCCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-'0-2,'0-0,1-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=45.2)
C2:
PF0008921=Trypsin=FE(13.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCAGTCCTGAGCAC
R:
GCGGCAGTGAGGACGAAG
Band lengths:
151-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)