GgaEX6024230 @ galGal3
Exon Skipping
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4996374-4996797:-
Coord C1 exon
chr21:4996746-4996797
Coord A exon
chr21:4996571-4996662
Coord C2 exon
chr21:4996374-4996471
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCATGCTGGGTGTCATACAGCCT
3' ss Score
3.87
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAGCCTACAACCATGCTGGGGGCCGTGTGTCTCGCCATCCTGCTGGGCTATG
Seq A exon
CCTATGGATGTGGGCAGCCAGCGGTGCCACCGCTGTTAGGCGCTCGCGTGGTGGGCGGTGAGGACGCCCGTGCTCACAGCTGGCCATGGCAG
Seq C2 exon
ATCTCACTGCAGTACAGCCGCGATGGAGCCTGGAGGCACACCTGTGGAGGAACCCTCATTTCCCCCAGCTGGGTGCTGACGGCCGCACACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(7.4=45.2)
C2:
PF0008921=Trypsin=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTACAACCATGCTGGG
R:
CTGGGGGAAATGAGGGTTCCT
Band lengths:
120-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]