DreEX0029628 @ danRer10
Exon Skipping
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21339117-21340361:-
Coord C1 exon
chr8:21340307-21340361
Coord A exon
chr8:21339515-21339603
Coord C2 exon
chr8:21339117-21339214
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTTTTACCTCAGCGT
3' ss Score
8.32
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACTGAAGATACAAGGATGATGAAGTTTGTGGTCTTGGCTGTTCTGGTTGTCGGAG
Seq A exon
CGTACAGTTGTGGGCTTCCCACTTTCCCTCCTATTGTGACGAGGGTTGTGGGAGGTGTGGATGTGCGTCCTAACAGCTGGCCCTGGCAG
Seq C2 exon
ATCTCCCTCCAGTACAAAAGTGGAAGCAACTGGTACCACACTTGCGGTGGAAGCCTTATTGACAAACAGTGGGTTTTGACTGCCGCTCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=46.7)
C2:
PF0008921=Trypsin=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAGATACAAGGATGATGAAGT
R:
AGTGAGCGGCAGTCAAAACC
Band lengths:
146-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]