HsaEX6028602 @ hg38
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C [Source:HGNC Symbol;Acc:HGNC:2523]
Coordinates
chr1:15438439-15440590:+
Coord C1 exon
chr1:15438439-15438504
Coord A exon
chr1:15440300-15440391
Coord C2 exon
chr1:15440493-15440590
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGGCCTCCTGTCTCCCCAGCCT
3' ss Score
8.61
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTCAGCCAGTCCTGAGCACCTAACCATGTTGGGCATCACTGTCCTCGCTGCGCTCTTGGCCTGTG
Seq A exon
CCTCCAGCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCTGGCAG
Seq C2 exon
ATCTCCCTCCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCTCACTGCCGCCCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-'0-6,'0-4,3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=45.2)
C2:
PF0008921=Trypsin=FE(13.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCAGTCCTGAGCAC
R:
GCGGCAGTGAGGACGAAG
Band lengths:
151-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains