BtaEX6069742 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53283132-53288451:-
Coord C1 exon
chr16:53288391-53288451
Coord A exon
chr16:53288036-53288124
Coord C2 exon
chr16:53283132-53283229
Length
89 bp
Sequences
Splice sites
3' ss Seq
AACCCTTCCTCTTTCTACAGCTC
3' ss Score
10.62
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AGGACTCCTTACGGACACACCATGATCAGGGCCTTACTGCTGTCTACGTTGGTGGCTGGAG
Seq A exon
CTCTCAGCTGTGGAGTCCCCACTTACCCACCACAACTGTCCAGAGTGGTTGGAGGTGAAGATGCAAGGCCCAACAGCTGGCCCTGGCAG
Seq C2 exon
GTCTCCCTGCAGTACAGCTCCAGTGGCCAGTGGCGTCACACCTGCGGAGGGTCTCTGATAGAACAAAATTGGGTCCTGACAGCAGCCCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=46.7)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCCTTACGGACACACC
R:
CAGTGGGCTGCTGTCAGGA
Band lengths:
153-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]