RnoEX6024313 @ rn6
Exon Skipping
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160382151-160383782:-
Coord C1 exon
chr5:160383722-160383782
Coord A exon
chr5:160383299-160383393
Coord C2 exon
chr5:160382151-160382248
Length
95 bp
Sequences
Splice sites
3' ss Seq
TCTCAACTCTCTCTTCACAGCTC
3' ss Score
10.42
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACAGACATCCACGGACACACCATGATCAGGACACTGCTGCTATCTGCCTTGGTGGCTGGAG
Seq A exon
CTCTCAGCTGCGGGTACCCCACTTACGAGGTCCAGCATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCAGTCCCAACAGCTGGCCCTGGCAG
Seq C2 exon
GTCTCCCTGCAGTACCTTTCCTCTGGAAAGTGGCACCACACCTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACCGCTGCCCATTGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=43.8)
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACATCCACGGACACACC
R:
CTGATACAATGGGCAGCGGTC
Band lengths:
159-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]