DreEX6097462 @ danRer10
Exon Skipping
Gene
ENSDARG00000043171 | CELA1 (3 of 7)
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
Coordinates
chr22:7457021-7457797:+
Coord C1 exon
chr22:7457021-7457088
Coord A exon
chr22:7457234-7457325
Coord C2 exon
chr22:7457697-7457797
Length
92 bp
Sequences
Splice sites
3' ss Seq
TACATATGTTTGTGTGTCAGCAC
3' ss Score
5.51
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAGTTCAGAAAGTCCAGACAGACTGGAAATGCTGAGGATCCTGTTGTTGAGCACGTTGGCTGCTTTGG
Seq A exon
CACTGGCTGAGCCCAGATATCTGGAGGATCTGGCCATTGAGGAGAGGGTTGTTGGTGGAGAGGTCGCAAAACCCAACTCCTGGCCCTGGCAG
Seq C2 exon
ATCTCTCTCCAGTTTCTGTCTGCCTTAGACTACTTTCACACCTGTGGTGGGACTCTGATCAGACCAGGATGGGTGTTGACTGCCGCCCACTGCGTTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043171-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=45.2)
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAGAAAGTCCAGACAGACTG
R:
CAGTGGGCGGCAGTCAAC
Band lengths:
159-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]