HsaEX1008152 @ hg38
Exon Skipping
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin like elastase family member 2B [Source:HGNC Symbol;Acc:HGNC:29995]
Coordinates
chr1:15467386-15491400:+
Coord C1 exon
chr1:15467386-15467538
Coord A exon
chr1:15476457-15476545
Coord C2 exon
chr1:15491295-15491400
Length
89 bp
Sequences
Splice sites
3' ss Seq
GACCCTTTCTCTTTTCACAGCCC
3' ss Score
10.45
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGACTCTGGCGGGCCACTGAACTGTCAGGCGTCTGACGGCCGGTGGCAGGTGCACGGCATCGTCAGCTTCGGGTCTCGCCTCGGCTGCAACTACTACCACAAGCCCTCCGTCTTCACGCGGGTCTCCAATTACATCGACTGGATCAATTCG
Seq A exon
CCCTCAGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGATGCTTGGAGGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAG
Seq C2 exon
GTGATTGCAAATAACTAACCAAAAGAAGTCCCTGGGACTGTTTCAGACTTGGAAAGGTCACAGAAGGAAAATAATATTATATAAAGTGACAACTATGCAAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704_MULTIEX1-2/8=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(6.0=46.7)
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACTGTCAGGCGTCTGA
R:
TCCCAGGGACTTCTTTTGGTT
Band lengths:
172-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains