HsaEX1008155 @ hg38
Exon Skipping
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin like elastase family member 2B [Source:HGNC Symbol;Acc:HGNC:29995]
Coordinates
chr1:15481098-15491400:+
Coord C1 exon
chr1:15481098-15481195
Coord A exon
chr1:15482265-15482393
Coord C2 exon
chr1:15491295-15491400
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGGGACCCCTTTCTCCCAGCTC
3' ss Score
4.53
5' ss Seq
AGGGTTCGT
5' ss Score
3.88
Exon sequences
Seq C1 exon
GTCTCCCTGCAGTACAGCTCCAATGGCCAGTGGTACCACACCTGCGGAGGGTCCCTGATAGCCAACAGCTGGGTCCTGACGGCTGCCCACTGCATCAG
Seq A exon
CTCCTCCGGGATCTACCGCGTGATGCTGGGCCAGCATAACCTCTACGTTGCAGAGTCCGGCTCGCTGGCCGTCAGTGTCTCTAAGATTGTGGTGCACAAGGACTGGAACTCCGACCAGGTCTCCAAAGG
Seq C2 exon
GTGATTGCAAATAACTAACCAAAAGAAGTCCCTGGGACTGTTTCAGACTTGGAAAGGTCACAGAAGGAAAATAATATTATATAAAGTGACAACTATGCAAATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704_MULTIEX1-5/8=3-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCAGTACAGCTCCAA
R:
TGTGATTTGCATAGTTGTCACTTT
Band lengths:
202-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains