MmuEX6097654 @ mm10
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141821325-141822327:-
Coord C1 exon
chr4:141822230-141822327
Coord A exon
chr4:141821702-141821830
Coord C2 exon
chr4:141821325-141821461
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTTACTCTGCCCCTCACAGCAA
3' ss Score
7.8
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
Seq A exon
CAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCAACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAACGTCGGCAATGG
Seq C2 exon
CTATGACATTGCCTTAATCAAACTGGCCAGCCCAGTGACCCTGAGCAAGAACATCCAGACAGCTTGCCTCCCACCCGCTGGCACCATTCTCCCGAGAAACTATGTCTGCTATGTCACAGGCTGGGGCCTGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'8-8,'8-5,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.4=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCAGGTCCTTTCCTC
R:
CCAGCCTGTGACATAGCAGAC
Band lengths:
220-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types