RnoEX6024314 @ rn6
Exon Skipping
Gene
ENSRNOG00000013628 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:RGD Symbol;Acc:2548]
Coordinates
chr5:160381167-160382248:-
Coord C1 exon
chr5:160382151-160382248
Coord A exon
chr5:160381615-160381743
Coord C2 exon
chr5:160381167-160381303
Length
129 bp
Sequences
Splice sites
3' ss Seq
TCTCGCTCTGCCCCTCACAGCAA
3' ss Score
8.2
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
GTCTCCCTGCAGTACCTTTCCTCTGGAAAGTGGCACCACACCTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACCGCTGCCCATTGTATCAG
Seq A exon
CAACTCTAGGACCTACCGCGTGCTGCTGGGCCGACACAGCCTCTCCACCTCGGAATCCGGCTCACTGGCTGTTCAGGTCTCCAAGCTTGTGGTCCATGAGAAGTGGAACGCTCAAAAGCTCTCCAACGG
Seq C2 exon
GAATGACATTGCCCTGGTCAAACTGGCTAGCCCAGTGGCCCTGACCAGCAAGATCCAGACGGCTTGCCTCCCACCCGCTGGTACCATTCTGCCAAACAACTACCCCTGCTACGTCACAGGCTGGGGCCGGCTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013628-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.4=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCTGCAGTACCTTTCC
R:
CCTGTGACGTAGCAGGGGTAG
Band lengths:
218-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]