GgaEX6024317 @ galGal3
Exon Skipping
Gene
ENSGALG00000004568 | E1BQL7_CHICK
Description
NA
Coordinates
chr21:5730244-5731672:+
Coord C1 exon
chr21:5730244-5730341
Coord A exon
chr21:5730727-5730855
Coord C2 exon
chr21:5731536-5731672
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTAGCTCTTTTCTTGTCCAGTTC
3' ss Score
7.16
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCTCTCTTCAATATCAATCAAGTGGTAAATGGTATCACACCTGTGGAGGAACCCTCATTGCAACCAACTGGGTGTTGACAGCTGCACACTGCATCAG
Seq A exon
TTCTACCAGGAAATATCGAGTGCTTCTTGGAAAATACAACCTAGAAGCTGAGGAGCAAGGATCTGTCACAGCCTCCACAGAAAAAATCATTGTCCATGAGAAATGGAATCGGTTCAGCGTTGCAAGTGG
Seq C2 exon
GTATGACATTGCTTTGATCAAACTCACCGAACACGTTGAACTGAGTGACAAAATCAAGCTGGCCTGCCTCCCTCCTGCAGAAAGCATCCTGTCATCCAACACTGCCTGCTACGTGACGGGATGGGGAAGACTGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568-'2-5,'2-4,3-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.4=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTCTTCAATATCAATCAAGTGG
R:
TCTGCAGTCTTCCCCATCCC
Band lengths:
235-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]