RnoEX0025267 @ rn6
Exon Skipping
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160398340-160402136:-
Coord C1 exon
chr5:160402039-160402136
Coord A exon
chr5:160400511-160400636
Coord C2 exon
chr5:160398340-160398476
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCCCATTTCTAGCAA
3' ss Score
9.85
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
GTCTCTCTCCAGTACCTCAAGGACGACACATGGAGGCACACCTGTGGGGGAAGTCTCATCACCACCAGCCACGTCCTCACTGCCGCCCACTGCATCAA
Seq A exon
CAAAGACTTCACTTACCGTGTGGGCCTGGGGAAGTATAATCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCTGAGGTGGACACCATCTACGTCCATGAGAAGTGGAACCGACTCTTCCTGTG
Seq C2 exon
GAACGACATCGCTATCATTAAGTTGGCTGAGCCTGTGGAACTGAGCAACACCATCCAGGTGGCCTGCATCCCAGAGGAAGGTTCCCTGCTGCCTCAGGACTATCCCTGCTATGTCACGGGCTGGGGTCGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745-'3-5,'3-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.0=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCTCCAGTACCTCAAGGA
R:
GACCCCAGCCCGTGACATAG
Band lengths:
226-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]