DreEX6049599 @ danRer10
Exon Skipping
Gene
ENSDARG00000056744 | ela2
Description
elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
Coordinates
chr8:21347388-21347961:+
Coord C1 exon
chr8:21347388-21347485
Coord A exon
chr8:21347622-21347744
Coord C2 exon
chr8:21347825-21347961
Length
123 bp
Sequences
Splice sites
3' ss Seq
AAACTTTTTTTGCCAAGCAGCAG
3' ss Score
2.23
5' ss Seq
CCGGTTGGT
5' ss Score
5.21
Exon sequences
Seq C1 exon
GCATCTCTCCAGTACCAGAGTGGCTCCAGCTTTTACCACACCTGTGGTGGCACCTTGATCGACAAGCAGTGGGTCTTGACCGCTGCTCACTGCATTAG
Seq A exon
CAGCCGAACTTACAGAGTCTTACTGGGCAAGCACAACCTGCCACTCAGCAGCGAGTCCGGCTCTCAGGCCATCTCTCCTGCCAGGATTATCGTTCATGAGAACTGGGACTCCTACAATATCCG
Seq C2 exon
CAATGACATCGCCCTGATCAAGTTGTCAACTCCAGTGACTTTCACTGACAAGATTTCACCTGCTTGTCTGCCTGATTCCGGCAGCATCCTTCCTCACAACTCCCCCTGTTACGTCACCGGCTGGGGACGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056744-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.8=100)
A:
PF0008921=Trypsin=FE(17.7=100)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTCTCCAGTACCAGAGTG
R:
ACGTAACAGGGGGAGTTGTGA
Band lengths:
212-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]