MmuEX7002598 @ mm10
Exon Skipping
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141841497-141845098:-
Coord C1 exon
chr4:141845001-141845098
Coord A exon
chr4:141843671-141843796
Coord C2 exon
chr4:141841497-141841633
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTTCCCACCTCTAGCAC
3' ss Score
9.96
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
GTCTCTCTTCAGTACCTCAGGGATGACACTTGGAGGCACACCTGTGGGGGCAGTCTCATCACCACCAGCCACGTCCTCACTGCTGCCCACTGCATCAA
Seq A exon
CACAAACTTGACCTACCGCGTGGGCCTGGGGAAGTATAACCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCGGAGGTGGATACCATCTACGTCCATGAGAAGTGGAACCGTCTTCTGCTGTG
Seq C2 exon
GAACGACATCGCCATCATCAAGTTGGCTGAGCCTGTGGAGCTGAGCGACACCATCCAGGTGGCCTGTATCCCAGAGCAAGATTCCTTGCTGCCTGGGGACTATCCCTGCTATGTCACTGGCTGGGGTCGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-'8-9,'8-8,10-9=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.8=100)
A:
PF0008921=Trypsin=FE(18.1=100)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCTCTTCAGTACCTCAGGGA
R:
CGACCCCAGCCAGTGACATAG
Band lengths:
227-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types