BtaEX6069750 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53298037-53300415:-
Coord C1 exon
chr16:53300318-53300415
Coord A exon
chr16:53299035-53299160
Coord C2 exon
chr16:53298037-53298173
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGCCCCCTTGCTCTGTCCAGCAA
3' ss Score
5.22
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
ATCTCCCTCCAGTACCTCAGGGATAACACGTGGAGGCACACCTGTGGCGGCACCCTGATCACCCCCAACCACGTGCTCACAGCTGCCCACTGCATCAG
Seq A exon
CAACACCCTGACCTACCGCGTGGCCCTGGGGAAGAACAACCTGGAGGTGGAGGACGAGGCAGGCTCCCTCTACGTGGGTGTGGACACCATCTTTGTCCATGAAAAGTGGAACTCCTTCCTAGTTCG
Seq C2 exon
CAATGACATTGCCCTTATCAAGCTGGCAGAGACCGTGGAATTGAGTGACACGATCCAGGTGGCCTGCCTGCCAGAGGAGGGCTCCTTGCTGCCTCAGGACTACCCCTGCTTCGTCACTGGCTGGGGCCGTCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.0=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCCAGTACCTCAGGG
R:
TGTAGAGACGGCCCCAGC
Band lengths:
234-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]