GgaEX6024232 @ galGal3
Exon Skipping
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4995540-4996471:-
Coord C1 exon
chr21:4996374-4996471
Coord A exon
chr21:4996181-4996303
Coord C2 exon
chr21:4995540-4995676
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGCTGATGGCCATTGGCAGCTC
3' ss Score
2.04
5' ss Seq
CGTGTAGGC
5' ss Score
0.82
Exon sequences
Seq C1 exon
ATCTCACTGCAGTACAGCCGCGATGGAGCCTGGAGGCACACCTGTGGAGGAACCCTCATTTCCCCCAGCTGGGTGCTGACGGCCGCACACTGCATCAG
Seq A exon
CTCCTCCCTGACGTACCGCGTGGTGCTGGGCGAGCACAACCTGGCAGTGGAGGACGACGGCGCGGTGGTGGCTGAGGTGGAGAAGATCGTTGTGCACGAGAAGTGGAACTCCTTCCTCATCGT
Seq C2 exon
CAATGACATTGCTTTGATCAAGTTGACGGAACCAGTGCAGGAGAGTGACACCATCCAGGCTGCCTGCCTGCCGCCCAGCGGGCTGGAGCTGGAGAATGACTACCCTTGCGAGATCACTGGCTGGGGACGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(16.8=100)
A:
PF0008921=Trypsin=FE(21.6=100)
C2:
PF0008921=Trypsin=FE(24.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGTACAGCCGCGATG
R:
TCCCCAGCCAGTGATCTCG
Band lengths:
219-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]