HsaEX6028601 @ hg19
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15766989-15770050:+
Coord C1 exon
chr1:15766989-15767086
Coord A exon
chr1:15768943-15769068
Coord C2 exon
chr1:15769914-15770050
Length
126 bp
Sequences
Splice sites
3' ss Seq
GGACCCCTTCCTCTGCCCAGCAA
3' ss Score
3.78
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATCTCCCTCCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCTCACTGCCGCCCACTGCATCAG
Seq A exon
CAACACCCGGACCTACCGTGTGGCCGTGGGAAAGAACAACCTGGAGGTGGAAGACGAAGAAGGATCCCTGTTTGTGGGTGTGGACACCATCCACGTCCACAAGAGATGGAATGCCCTCCTGTTGCG
Seq C2 exon
CAATGATATTGCCCTCATCAAGCTTGCAGAGCATGTGGAGCTGAGTGACACCATCCAGGTGGCCTGCCTGCCAGAGAAGGACTCCCTGCTCCCCAAGGACTACCCCTGCTATGTCACCGGCTGGGGCCGCCTCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
PF0008921=Trypsin=FE(18.0=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTCCAGTACCTCAAGA
R:
CCGGTGACATAGCAGGGGTAG
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)