DreEX0029630 @ danRer10
Exon Skipping
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21338498-21339214:-
Coord C1 exon
chr8:21339117-21339214
Coord A exon
chr8:21338716-21338838
Coord C2 exon
chr8:21338498-21338634
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTGGTGGCCCTGCAGCAG
3' ss Score
7.98
5' ss Seq
CCGGTAAAG
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATCTCCCTCCAGTACAAAAGTGGAAGCAACTGGTACCACACTTGCGGTGGAAGCCTTATTGACAAACAGTGGGTTTTGACTGCCGCTCACTGCATCAG
Seq A exon
CAGTAGCAGAACTTACAGAGTGTTTTTGGGAAAACATAGCCTGAGCCAGGAGGAGAACGGCTCTGTCGCTATTGGTGCTGGAAAGATCATTGTCCACGAGGCTTGGAACTCCTTCACAATCCG
Seq C2 exon
TAATGACATCGCCCTGATCAAACTGGAGACTGCTGTTACCATAGGTGACACCATCACTCCTGCATGTCTTCCCGAGGCTGGCTATGTGCTGCCCCATAATGCTCCCTGCTACGTCACTGGATGGGGACGTCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-'2-7,'2-3,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.8=100)
A:
PF0008921=Trypsin=FE(17.7=100)
C2:
PF0008921=Trypsin=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTCCAGTACAAAAGTG
R:
GTAGAGACGTCCCCATCCAGT
Band lengths:
234-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]