HsaINT1007174 @ hg38
Intron Retention
Gene
ENSG00000215704 | CELA2B
Description
chymotrypsin like elastase family member 2B [Source:HGNC Symbol;Acc:HGNC:29995]
Coordinates
chr1:15476101-15476545:+
Coord C1 exon
chr1:15476101-15476165
Coord A exon
chr1:15476166-15476456
Coord C2 exon
chr1:15476457-15476545
Length
291 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GACCCTTTCTCTTTTCACAGCCC
3' ss Score
10.45
Exon sequences
Seq C1 exon
CTTACAGAACTCCCACGGACACACCATGATTAGGACCCTGCTGCTGTCCACTTTGGTGGCTGGAG
Seq A exon
GTAAGTCCTGTCACCCAGAGGCACTGGTTTCCCATCCCCTGGTGGGGCTGGAAATGGGATCTTCCTGTCCTCCCCTCTCGCCCCCACCCAACCCCTACTGCATTCAGACCTATAATCATAAGAAAACCGAAATGGAGTTTCAAAGAATTGGAGCAAACAGAAGGATTTTATGACCTCTTGGGATCCTTCTAGAACAAGGGTTTTCTATTTGGGGGTTCAGAATGCAGCATGTATAGTTTACATTGTGTGGGTCGCTGCTTCCTGGACTCAAGACCCTTTCTCTTTTCACAG
Seq C2 exon
CCCTCAGTTGTGGGGTCTCCACTTACGCGCCTGATATGTCTAGGATGCTTGGAGGTGAAGAAGCGAGGCCCAACAGCTGGCCCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215704:ENST00000375910:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(6.0=46.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGAACTCCCACGGACACA
R:
CTGCCAGGGCCAGCTGTT
Band lengths:
152-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains