MmuEX6097655 @ mm9
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141374897-141377745:-
Coord C1 exon
chr4:141377617-141377745
Coord A exon
chr4:141377240-141377376
Coord C2 exon
chr4:141374897-141375042
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATCTTTATTCCTGACCCAGCTA
3' ss Score
3.96
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCAACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAACGTCGGCAATGG
Seq A exon
CTATGACATTGCCTTAATCAAACTGGCCAGCCCAGTGACCCTGAGCAAGAACATCCAGACAGCTTGCCTCCCACCCGCTGGCACCATTCTCCCGAGAAACTATGTCTGCTATGTCACAGGCTGGGGCCTGCTGCAGA
Seq C2 exon
CCAATGGGAACAGTCCTGACACCCTGAGGCAGGGCCGCCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCTGTGAAGTCCAGCATGGTGTGCGCTGGTGGCGACGGCGTGACCTCCAGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'5-6,'5-3,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGACCTACCGAGTGCTGC
R:
CCACCAGCGCACACCATG
Band lengths:
245-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: