BtaEX6069745 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53277250-53281366:-
Coord C1 exon
chr16:53281238-53281366
Coord A exon
chr16:53278876-53279012
Coord C2 exon
chr16:53277250-53277395
Length
137 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTTTTCCAACCCAGGAA
3' ss Score
8.24
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTCCTCCAGGACCTACCGAGTGGTGGTGGGCCGGCAGAGTCTCTCCACCGTTGAGTCTGGCTCACTGACCATCGCAGTCTCCAAGTCCGTGATACACGAGAAGTGGAACTCCAACCAGCTCGCCCAAGG
Seq A exon
GAATGACATTGCCCTGCTCAAACTGGCCAGCTCTGTCCCCCTGACTGACAAGATCCAGCTGGGCTGCCTGCCGCCTGCCGGCACCATCCTGCCCAACAACTACGTCTGCTATGTCACGGGCTGGGGAAGACTGCAGA
Seq C2 exon
GCAATGGAGCTCTTCCTGACATCCTGCAGCAGGGCAAGCTGCTCGTTGTGGACTATGCCACATGCTCCCAACCTAGTTGGTGGGGCAGCACTGTGAAGACCAATATGATCTGTGCTGGGGGAGACGGCGTGACCTCCAGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(18.4=100)
A:
PF0008921=Trypsin=FE(19.7=100)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGACCTACCGAGTGG
R:
GTCTCCCCCAGCACAGATCAT
Band lengths:
251-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]