MmuEX6097699 @ mm10
Exon Skipping
Gene
ENSMUSG00000041805 | Pramel1
Description
preferentially expressed antigen in melanoma-like 1 [Source:MGI Symbol;Acc:MGI:1890541]
Coordinates
chr4:143396430-143400160:+
Coord C1 exon
chr4:143396430-143396747
Coord A exon
chr4:143397050-143397616
Coord C2 exon
chr4:143398368-143400160
Length
567 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGTTTCACCCACAGCAG
3' ss Score
10.09
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GAATCCTTCCTGAAGATCCATCAGGATGAGCTGCAAGACTCCACCCACACTCCAGGAACTGGCAGAGAACAGCCTCCTGAAGAACCAGGACTTGGCTATCTCTGCTCTGGATGACATACCCTCACTTTTCTTCCCATCACTGTTCAAAAAGGCCTGCAGAAATAGATATGTTGGGATCATAAAGGCGATGGTGCAGGCGTGGCCCTTCCCCTGTCTTCCTCTGGGGGCCATGATCAGTAGGAAGACTGCCTACAGGAGAATCTTAGAGATTATCCTGTATGGGCTTGATGCCTTGCTTTCCCAGAAAGTTCCCCACAG
Seq A exon
CAGGTGCAAGCTGCAAGTGCTGGATTTACGGGTTATGCCTTTGAAGCTGTGGAACAGGTTGCCTGTGTTTGGGACTGCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCATTCGGGAACAGAGGTGAAACAGCCAGTGAAGGTGCTGGTAGACTTGGTCCTCAAGGAAAGCCCACTAGATTCCACAGAGTCCTTCCTCGTTCAGTGGGTGGATAACAGGAATGGTTTGGTGAGTTTGTGCTGTTGCAAGCTGCAGATCTGGGCTATGTCCATGTATTACCACAGAAAACTTTTGGAGATTTTGGATCTGGACTCTGTCCAGGAGCTGCGTATGTACTGCATCAGTAATCCTGTCTGCCTGCTTAACTTCGCCCCTTACTTGGGTCGCATGAGGAACCTGCGCTGCCTCATCCTCTCTCACCTCTGGCAGACCTTCTCGATGACCCCGGTGGAGAAGCAGCAGGTTATTACCCAGTTCACGTCTCAGTTCCTCAAACTGAAATGCCTCCAGATCCTGCATCTGGATACTGTCTTCTTCCTAGAGGGTCATCTGGATGAGCTATTCTG
Seq C2 exon
GTGGCTGAAGACACCCTTAGAGACCCTGTCTGTGATTGATTGTAATCTCTCAAAATCAGACTGGTTCCATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTCTGTTACTAAAATCTGCATCTACCCTAACATCCCTGGATTTGGAGGGCTGTCAAATGATGGACTCTCAACTCAGTGCCATCCTACCTGCTCTGAGATGCTGTACACAGCTCACCAAGTTTAATTTCCATGGGAACTATATCTCCATGCCTATCCTGAGGGAGCTGGCATATAACGTTGTCAAGCAGAAATCCCAACAGTCAAAGATACGCTTTATCCCAAGCTGTAGTCATCACAGTGGTCTGGAGTTTGAGGCCATTTCTCAGCCTCATATTGTGTTTGTAGATGTGGATCGGACTACTGGGGAGCAAGAACAAGTCTTGTTTTATGCTATTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041805-'1-2,'1-1,4-2=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGGCCATGATCAGTAG
R:
TCTCAGAGCAGGTAGGATGGC
Band lengths:
355-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types