HsaEX1029302 @ hg38
Exon Skipping
Gene
ENSG00000204480 | PRAMEF19
Description
PRAME family member 19 [Source:HGNC Symbol;Acc:HGNC:24908]
Coordinates
chr1:13369067-13371693:-
Coord C1 exon
chr1:13371614-13371693
Coord A exon
chr1:13371009-13371227
Coord C2 exon
chr1:13369067-13369640
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTATGTTACTCACAGGAG
3' ss Score
7.55
5' ss Seq
TGGGTGGGT
5' ss Score
3.82
Exon sequences
Seq C1 exon
ATGAAGACGCCTGATCTGGAGATCTTACATTATGTAGTGGATGGGATTGATTGCCTGCTTGCCCAAAAGGTTCGCCCCAG
Seq A exon
GAGGTGGAAACTTCAAGTGCTGGAAATGCGGGATGTTGATGAGAATTTTTGGACCATATGGTCTGGAGCCAGGCCCCTGTCCTGCTCCCCAGAGGCCATGAGTAAGAGACAGACAGTGGAGGACTGTCCAAGGACAGGAGAGAAGCAGCCCTTGAAGGTGTTCATGGATGTTTGCCTCAAGGAAAAATCCGTGGATGAAGATCTGAGCTTCTTCTCTGG
Seq C2 exon
GTGCCTCAAGAGCCCGTTGGAGACATTGGCATTAACTTATGGCTCCCTAGATGAAGAGGACTTGAAATGTCTGCCCTGGTACCCAAGTCTCAGTCAACTGAAGCAGCTGAATCTGAGTCATGGTACACTGCGCTTCATCCGTCTTGAGCCCCTCCGAGCTCTGCTAGAGAAAGTTGCTGCCACTCTTCAGACCCTCTTCTTAGTGGACTGTGGGATTGGGGACTCCAAACTCAGGGTCATCCTGCCTGCCCTGAGCCGCTGCTCCAACCTCACCACTTTCTGCTTTCACGGCAATGACACGTCCATGGATGGTCTGAAGGACCTGCTGCGCCACACAGGCAGGCTGAGCAATTTGAGCCTGGAAACATATCCTGCCCCTCGGGAGAGTCTTGACAACAGGGGTCGTGTCATTTCGGAGCTCCTCACCCCACTTCAGGCTGAGCTGATGCGTATACTGAGGGAAGTAAGGGAGCCCAACAGGATCTTCTTTGGTCCCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204480_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGACGCCTGATCTGGAGA
R:
CCCCAATCCCACAGTCCACTA
Band lengths:
300-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains