MmuEX6097699 @ mm9
Exon Skipping
Gene
ENSMUSG00000041805 | Pramel1
Description
preferentially expressed antigen in melanoma-like 1 [Source:MGI Symbol;Acc:MGI:1890541]
Coordinates
chr4:142986333-142990063:+
Coord C1 exon
chr4:142986333-142986650
Coord A exon
chr4:142986953-142987519
Coord C2 exon
chr4:142988271-142990063
Length
567 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTGTTTCACCCACAGCAG
3' ss Score
10.09
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GAATCCTTCCTGAAGATCCATCAGGATGAGCTGCAAGACTCCACCCACACTCCAGGAACTGGCAGAGAACAGCCTCCTGAAGAACCAGGACTTGGCTATCTCTGCTCTGGATGACATACCCTCACTTTTCTTCCCATCACTGTTCAAAAAGGCCTGCAGAAATAGATATGTTGGGATCATAAAGGCGATGGTGCAGGCGTGGCCCTTCCCCTGTCTTCCTCTGGGGGCCATGATCAGTAGGAAGACTGCCTACAGGAGAATCTTAGAGATTATCCTGTATGGGCTTGATGCCTTGCTTTCCCAGAAAGTTCCCCACAG
Seq A exon
CAGGTGCAAGCTGCAAGTGCTGGATTTACGGGTTATGCCTTTGAAGCTGTGGAACAGGTTGCCTGTGTTTGGGACTGCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCATTCGGGAACAGAGGTGAAACAGCCAGTGAAGGTGCTGGTAGACTTGGTCCTCAAGGAAAGCCCACTAGATTCCACAGAGTCCTTCCTCGTTCAGTGGGTGGATAACAGGAATGGTTTGGTGAGTTTGTGCTGTTGCAAGCTGCAGATCTGGGCTATGTCCATGTATTACCACAGAAAACTTTTGGAGATTTTGGATCTGGACTCTGTCCAGGAGCTGCGTATGTACTGCATCAGTAATCCTGTCTGCCTGCTTAACTTCGCCCCTTACTTGGGTCGCATGAGGAACCTGCGCTGCCTCATCCTCTCTCACCTCTGGCAGACCTTCTCGATGACCCCGGTGGAGAAGCAGCAGGTTATTACCCAGTTCACGTCTCAGTTCCTCAAACTGAAATGCCTCCAGATCCTGCATCTGGATACTGTCTTCTTCCTAGAGGGTCATCTGGATGAGCTATTCTG
Seq C2 exon
GTGGCTGAAGACACCCTTAGAGACCCTGTCTGTGATTGATTGTAATCTCTCAAAATCAGACTGGTTCCATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTCTGTTACTAAAATCTGCATCTACCCTAACATCCCTGGATTTGGAGGGCTGTCAAATGATGGACTCTCAACTCAGTGCCATCCTACCTGCTCTGAGATGCTGTACACAGCTCACCAAGTTTAATTTCCATGGGAACTATATCTCCATGCCTATCCTGAGGGAGCTGGCATATAACGTTGTCAAGCAGAAATCCCAACAGTCAAAGATACGCTTTATCCCAAGCTGTAGTCATCACAGTGGTCTGGAGTTTGAGGCCATTTCTCAGCCTCATATTGTGTTTGTAGATGTGGATCGGACTACTGGGGAGCAAGAACAAGTCTTGTTTTATGCTATTTGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041805-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127992=LRR_4=WD(100=31.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGGGCCATGATCAGTAG
R:
TCTCAGAGCAGGTAGGATGGC
Band lengths:
355-922
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: