MmuEX6099080 @ mm9
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14896757-14904510:+
Coord C1 exon
chr2:14896757-14896866
Coord A exon
chr2:14902933-14903084
Coord C2 exon
chr2:14904415-14904510
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTAAACCTTTACAGCGG
3' ss Score
7.86
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GATATCCATCACAAGAGTCACTGCTGACATCTCCCTTGCCAAACGCTCAGTATTAAACAATCCCAGTAAGCATGCAATCATAGAAAGATCCAACACAAGGTCCAGCTTAG
Seq A exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTTTGGCCCCTATCATAGTGTACGTAAAGATTTCTTCTCCCAAG
Seq C2 exon
GTTTTACAAAGGTTGATAAAATCTCGAGGGAAATCTCAAGCAAAACACCTCAATGTCCAGATGGTAGCAGCTGATAAACTGGCCCAATGTCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'26-22,'26-20,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.3=100)
A:
PF0062516=Guanylate_kin=FE(27.5=100)
C2:
PF0062516=Guanylate_kin=FE(17.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCATCACAAGAGTCACTGCTG
R:
GGAGGACATTGGGCCAGTTTA
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: