DreEX6008621 @ danRer10
Exon Skipping
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71610305-71611811:-
Coord C1 exon
chr7:71611702-71611811
Coord A exon
chr7:71611116-71611267
Coord C2 exon
chr7:71610305-71610400
Length
152 bp
Sequences
Splice sites
3' ss Seq
GTCTGTTTGTTTGTGTGTAGCGG
3' ss Score
7.61
5' ss Seq
AAGGTTCAC
5' ss Score
1.87
Exon sequences
Seq C1 exon
GATAACCATCACAAGAGTGGCAGCTGATATCTCTCTGGCCAAACGCTCAGTACTGAACAACCCCAGTAAACACGCCATCATCGAGCGCTCAAACACACGCTCCAATCTAG
Seq A exon
CGGAGGTTCAGAGCGAGATCGAGAGGATATTTGAGCTGGCCCGAACGCTGCAGCTGGTGGTTTTGGACGCCGACACAATAAACCATCCGTCACAGCTGGGGAAAACCTGTCTGGCACCCATCATTGTCTACATCAAGATCACCTCTCCAAAG
Seq C2 exon
GTTTTGCAGAGATTAATCAAGTCCCGAGGAAAGTCTCAGGCCAAACATCTCAATGTACAGATGGTGGCAGCTGACAAACTGGCCCAGTGCCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
PF0062516=Guanylate_kin=FE(27.6=100)
C2:
PF0062516=Guanylate_kin=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATCACAAGAGTGGCAGC
R:
CTGGGCCAGTTTGTCAGCTG
Band lengths:
194-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]