DreEX6008622 @ danRer10
Exon Skipping
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71607693-71611267:-
Coord C1 exon
chr7:71611116-71611267
Coord A exon
chr7:71610305-71610400
Coord C2 exon
chr7:71607693-71607887
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTCGATCTTTCAGGTT
3' ss Score
11.35
5' ss Seq
TCAGTGAGA
5' ss Score
2.69
Exon sequences
Seq C1 exon
CGGAGGTTCAGAGCGAGATCGAGAGGATATTTGAGCTGGCCCGAACGCTGCAGCTGGTGGTTTTGGACGCCGACACAATAAACCATCCGTCACAGCTGGGGAAAACCTGTCTGGCACCCATCATTGTCTACATCAAGATCACCTCTCCAAAG
Seq A exon
GTTTTGCAGAGATTAATCAAGTCCCGAGGAAAGTCTCAGGCCAAACATCTCAATGTACAGATGGTGGCAGCTGACAAACTGGCCCAGTGCCCTTCA
Seq C2 exon
GAGCTCTTTGACATTATTCTAGATGAGAATCAGCTGGAAGACGCCTGTGAGCACATGGCCGACTATCTGGAGCTATACTGGAAGTCCACTCATCCTCCCAGTGGCGCTCCGTCCACTCCACTGCTGGACAAACTGAGCGCAGTGACCGCAGCTGCAGTGGCCTGCAAAGAGCAGCTGACCAACACACAACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.395
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=38.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTTGAGCTGGCCCGAACG
R:
GGCGTCTTCCAGCTGATTCTC
Band lengths:
171-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]