MmuEX6099079 @ mm10
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14981306-14984439:+
Coord C1 exon
chr2:14981306-14981457
Coord A exon
chr2:14982788-14982883
Coord C2 exon
chr2:14984251-14984439
Length
96 bp
Sequences
Splice sites
3' ss Seq
CAAACCTGTACCTTTTCCAGGTT
3' ss Score
8.38
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTTTGGCCCCTATCATAGTGTACGTAAAGATTTCTTCTCCCAAG
Seq A exon
GTTTTACAAAGGTTGATAAAATCTCGAGGGAAATCTCAAGCAAAACACCTCAATGTCCAGATGGTAGCAGCTGATAAACTGGCCCAATGTCCTCCG
Seq C2 exon
CAGGAATCATTTGATGTGATCTTGGATGAGAACCAGCTGGAGGACGCTTGTGAGCATCTTGCCGACTATCTGGAGGCATACTGGAAGGCCACCCACCCTCCCAGCGGTAACCTCCCCAACCCTCTGCTTAGCCGGACTTTAGCCTCCTCAACTTTACCTCTGAGCCCCACCCTCGCCTCTAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'38-42,'38-40,39-42=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.524
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PD(22.3=91.3)
A:
PF0062516=Guanylate_kin=FE(17.0=100)
C2:
PF0062516=Guanylate_kin=PD(14.3=41.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGTAGTCCTTGACGCGG
R:
AGTCGGCAAGATGCTCACAAG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types