GgaEX6018732 @ galGal3
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19054366-19057534:-
Coord C1 exon
chr2:19057383-19057534
Coord A exon
chr2:19055817-19055912
Coord C2 exon
chr2:19054366-19054551
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATGTCTTATTTTCCACAGGTT
3' ss Score
9.03
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGAAGTTCAGAGTGAAATTGAACGGATTTTTGAATTAGCAAGGACACTGCAGTTGGTAGTGCTCGATGCTGACACCATAAATCACCCAGCGCAGCTGAGCAAAACCTCTCTGGCACCCATTATAGTATACGTAAAGATTTCTTCTCCTAAG
Seq A exon
GTTTTACAGAGGTTAATAAAATCTCGAGGGAAATCTCAGGCCAAACACCTTAATGTTCAGATGGTGGCAGCTGATAAACTGGCACAGTGTCCTCCC
Seq C2 exon
GAAATGTTCGATGTAATTCTTGATGAGAACCAGCTGGAAGATGCTTGTGAGCACCTTGCTGACTATCTGGAAGCCTACTGGAAGGCCACACATCCGCCTAGCAGCAATCCTCCTAACCAGCTTCTCACTCGGACACTTGCAACAGCCACTCTTCCTATTAGCCCAGGTCCAAATATTAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.505
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3),PF068127=ImpA-rel_N=WD(100=45.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGAGCAAAACCTCTCT
R:
GCTGGTTAGGAGGATTGCTGC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]