RnoEX6054263 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:82013468-82016442:+
Coord C1 exon
chr17:82013468-82013619
Coord A exon
chr17:82014839-82014934
Coord C2 exon
chr17:82016254-82016442
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAAACCCATACCTTTTACAGGTT
3' ss Score
7.71
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTCTGGCCCCTATCATAGTGTATGTAAAGATTTCTTCTCCTAAG
Seq A exon
GTTTTACAAAGGTTAATAAAATCTCGAGGAAAGTCTCAAGCAAAGCACCTCAATGTCCAGATGGTGGCAGCCGATAAACTGGCCCAGTGTCCCCCG
Seq C2 exon
CAGGAGTCATTTGATGTGATCTTGGATGAGAACCAACTTGAGGATGCTTGTGAGCATCTCGCCGACTATCTGGAGGCGTACTGGAAGGCCACCCACCCTCCCAGCAGTAACCTCCCCAACCCTCTCCTTAGCCGGACTTTAGCCACCTCAACTTTACCTCTGAGCCCCACCCTTGCCTCTAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'25-24,'25-23,26-24=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.524
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.5=100)
A:
PF0062516=Guanylate_kin=FE(17.0=100)
C2:
PF0062516=Guanylate_kin=PD(14.3=41.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAGTCCTTGACGCGGATA
R:
CCTCCAGATAGTCGGCGAGAT
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]