BtaEX6064413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33280515-33283700:+
Coord C1 exon
chr13:33280515-33280666
Coord A exon
chr13:33282399-33282494
Coord C2 exon
chr13:33283515-33283700
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAAAACCTCGTCTTTTGCAGGTT
3' ss Score
9.23
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CGGAAGTTCAGAGTGAAATCGAAAGGATTTTTGAACTTGCAAGAACACTGCAACTGGTGGTCCTTGACGCGGACACTATCAATCACCCAGCCCAGCTCAGTAAAACCTCTCTGGCCCCTATTATAGTGTATGTCAAGATTTCTTCTCCTAAG
Seq A exon
GTTTTACAGAGGTTAATAAAGTCTCGAGGGAAATCTCAAGCGAAGCACCTCAATGTCCAGATGGTGGCGGCAGATAAGCTAGCTCAGTGTCCTCCA
Seq C2 exon
GAGCTGTTTGATGTGATCCTGGATGAGAACCAGCTCGAGGACGCCTGTGAACACCTGGCCGACTACCTGGAGGCCTACTGGAAGGCCACCCACCCTCCCAGCAGCAGTCTCCCCAACCCCCTTCTCAGCCGCACTTTAGCCACCTCCACCCTGCCCGTCAGCCCCACGCTAGCCTCCAACTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.516
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGACGCGGACACTATCA
R:
CCAGTAGGCCTCCAGGTAGTC
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]