GgaEX6018732 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19009040-19011552:-
Coord C1 exon
chr2:19011401-19011552
Coord A exon
chr2:19010491-19010586
Coord C2 exon
chr2:19009040-19009225
Length
96 bp
Sequences
Splice sites
3' ss Seq
AAATGTCTTATTTTCCACAGGTT
3' ss Score
9.03
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGAAGTTCAGAGTGAAATTGAACGGATTTTTGAATTAGCAAGGACACTGCAGTTGGTAGTGCTCGATGCTGACACCATAAATCACCCAGCGCAGCTGAGCAAAACCTCTCTGGCACCCATTATAGTATACGTAAAGATTTCTTCTCCTAAG
Seq A exon
GTTTTACAGAGGTTAATAAAATCTCGAGGGAAATCTCAGGCCAAACACCTTAATGTTCAGATGGTGGCAGCTGATAAACTGGCACAGTGTCCTCCC
Seq C2 exon
GAAATGTTCGATGTAATTCTTGATGAGAACCAGCTGGAAGATGCTTGTGAGCACCTTGCTGACTATCTGGAAGCCTACTGGAAGGCCACACATCCGCCTAGCAGCAATCCTCCTAACCAGCTTCTCACTCGGACACTTGCAACAGCCACTCTTCCTATTAGCCCAGGTCCAAATATTAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'16-22,'16-21,17-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.468
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGAGCAAAACCTCTCT
R:
GCTGGTTAGGAGGATTGCTGC
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]