MmuEX6099079 @ mm9
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14902933-14906066:+
Coord C1 exon
chr2:14902933-14903084
Coord A exon
chr2:14904415-14904510
Coord C2 exon
chr2:14905878-14906066
Length
96 bp
Sequences
Splice sites
3' ss Seq
CAAACCTGTACCTTTTCCAGGTT
3' ss Score
8.38
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTTTGGCCCCTATCATAGTGTACGTAAAGATTTCTTCTCCCAAG
Seq A exon
GTTTTACAAAGGTTGATAAAATCTCGAGGGAAATCTCAAGCAAAACACCTCAATGTCCAGATGGTAGCAGCTGATAAACTGGCCCAATGTCCTCCG
Seq C2 exon
CAGGAATCATTTGATGTGATCTTGGATGAGAACCAGCTGGAGGACGCTTGTGAGCATCTTGCCGACTATCTGGAGGCATACTGGAAGGCCACCCACCCTCCCAGCGGTAACCTCCCCAACCCTCTGCTTAGCCGGACTTTAGCCTCCTCAACTTTACCTCTGAGCCCCACCCTCGCCTCTAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.524
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.5=100)
A:
PF0062516=Guanylate_kin=FE(17.0=100)
C2:
PF0062516=Guanylate_kin=PD(14.3=41.3),PF068127=ImpA-rel_N=WD(100=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGTAGTCCTTGACGCGG
R:
AGTCGGCAAGATGCTCACAAG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: