RnoEX6054264 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:82010473-82014934:+
Coord C1 exon
chr17:82010473-82010582
Coord A exon
chr17:82013468-82013619
Coord C2 exon
chr17:82014839-82014934
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTAAACCTTTACAGCGG
3' ss Score
7.86
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GATATCCATCACAAGAGTTACTGCTGACATCTCCCTGGCCAAACGCTCAGTATTAAACAACCCCAGTAAGCACGCAATAATAGAAAGATCCAACACAAGGTCGAGCTTAG
Seq A exon
CGGAAGTTCAGAGTGAAATTGAAAGGATTTTTGAACTTGCAAGAACACTGCAATTGGTAGTCCTTGACGCGGATACAATTAATCACCCAGCTCAACTCAGTAAGACCTCTCTGGCCCCTATCATAGTGTATGTAAAGATTTCTTCTCCTAAG
Seq C2 exon
GTTTTACAAAGGTTAATAAAATCTCGAGGAAAGTCTCAAGCAAAGCACCTCAATGTCCAGATGGTGGCAGCCGATAAACTGGCCCAGTGTCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'23-23,'23-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.202 A=0.000 C2=0.031
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.3=100)
A:
PF0062516=Guanylate_kin=FE(27.5=100)
C2:
PF0062516=Guanylate_kin=FE(17.0=100)
Main Skipping Isoform:
ENSRNOT00000031542fB2244
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCCATCACAAGAGTTACTGCTGA
R:
GGGACACTGGGCCAGTTTATC
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]