MmuEX6099256 @ mm9
Exon Skipping
Gene
ENSMUSG00000026784 | Pdss1
Description
prenyl (solanesyl) diphosphate synthase, subunit 1 [Source:MGI Symbol;Acc:MGI:1889278]
Coordinates
chr2:22768120-22771044:+
Coord C1 exon
chr2:22768120-22768261
Coord A exon
chr2:22770722-22770833
Coord C2 exon
chr2:22770935-22771044
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTATTCTCTTTTTTTCCAGGCT
3' ss Score
10.27
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGAGATGCAAGCCAGCCAGCGCTCCATAGCCTTAGTTGCAGAAATGATCCACACTGCTACTCTGGTTCATGATGACGTTATTGATGATGCAAGTTCTCGAAGAGGAAAACATACAGTTAATAAAATCTGGGGTGAGAAAAAG
Seq A exon
GCTGTTCTTGCTGGAGATTTAATTCTTTCTGCAGCGTCTGTAGCTCTGGCACGGATTGGAAACACAGCTGTTGTATCTATGTTAGCCCAAGTTATTGAAGATTTGGTGCGTG
Seq C2 exon
GTGAATTTCTTCAGCTAGGGTCAAAAGAAAATGAGAATGAAAGGTTTGCCCACTACCTTGAGAAGACCTTCAAGAAGACAGCCAGCCTGATAGCCAACAGTTGTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026784-'10-10,'10-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(34.8=100)
A:
PF0034812=polyprenyl_synt=FE(14.1=100),PF073076=HEPPP_synt_1=FE(27.4=100)
C2:
PF0034812=polyprenyl_synt=PD(25.2=87.2),PF073076=HEPPP_synt_1=PD(29.3=83.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCAAGCCAGCCAGC
R:
AACTGTTGGCTATCAGGCTGG
Band lengths:
243-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: