DreEX0054529 @ danRer10
Exon Skipping
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5989329-5991747:-
Coord C1 exon
chr24:5991606-5991747
Coord A exon
chr24:5989515-5989626
Coord C2 exon
chr24:5989329-5989438
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTCTAATGTTTAGGCT
3' ss Score
8.39
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GGTTTTGCTACCGGCGCAGCGCTCAATCGCTATGATCTCTGAGATGATCCACACCGCCAGCCTGGTGCATGATGACGTCATTGATGACTCGGACAAGAGACGTGGGAAAAACACCATTAATAATGTGTGGGGAGAGAGAAAA
Seq A exon
GCTATTCTGGCTGGAGATTTCATTCTGTCAGCGGCGTCCATGGCATTGGCTCGCATTGGGAACACTACAGTGGTTTCTGTGCTGTCACAAGTTATAGAAGACCTCGTGCGAG
Seq C2 exon
GTGAGTTTATGCAGCTGGGCTCCAAAGAGAACGAAAACGAGCGATTCAAGCATTACCTCGAGAAAACCTTCAAGAAGACGGCCAGTCTGATTGCGAACAGCTGTAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(18.0=100)
A:
PF0034812=polyprenyl_synt=FE(14.2=100)
C2:
PF0034812=polyprenyl_synt=FE(13.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTGCTACCGGCGCAG
R:
AGCTGTTCGCAATCAGACTGG
Band lengths:
244-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]