GgaEX0010747 @ galGal4
Exon Skipping
Gene
ENSGALG00000007559 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:HGNC:17759]
Coordinates
chr2:15981710-15989574:-
Coord C1 exon
chr2:15989433-15989574
Coord A exon
chr2:15988555-15988666
Coord C2 exon
chr2:15981710-15981790
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTTTTAACTCTTAGGCA
3' ss Score
9.91
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GGAGGTGCAAGCAAGCCAGCGCTCTGTGGCCATAATTGCAGAGATGATCCACACGGCTAGCCTCGTTCATGACGATGTTATTGATGATGCAAATTCTCGCAGAGGAAAAATGACAGTCAATCAGATCTGGGGAGAGAGGAAG
Seq A exon
GCAGTTCTAGCTGGTGATTTCATCCTATCAGCTGCTTCCTTAGCTTTAGCACGAATTGGAAACACTACTATCATCTCTGTTCTAACTCAGGTGATTGAAGATCTGGTGCGTG
Seq C2 exon
GTTTCAATTCTAGGCTGCCCCGATCCCAAAGTTCACGAGATCGCATACCAGTACGGAAAAAACGTTGGCATTGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559_MULTIEX1-1/5=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(17.9=100),PF073076=HEPPP_synt_1=FE(35.3=100)
A:
PF0034812=polyprenyl_synt=FE(14.1=100),PF073076=HEPPP_synt_1=FE(27.8=100)
C2:
PF0034812=polyprenyl_synt=FE(9.9=100),PF073076=HEPPP_synt_1=PD(2.3=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGCAAGCAAGCCAG
R:
CTGAAAAGCAATGCCAACGTT
Band lengths:
223-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]