MmuEX6099490 @ mm10
Exon Skipping
Gene
ENSMUSG00000026955 | Sapcd2
Description
suppressor APC domain containing 2 [Source:MGI Symbol;Acc:MGI:1919330]
Coordinates
chr2:25375968-25378213:+
Coord C1 exon
chr2:25375968-25376075
Coord A exon
chr2:25376164-25376274
Coord C2 exon
chr2:25376352-25378213
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTGTACTTCCACAGGCT
3' ss Score
8.81
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACTTTGGGGCTGAAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAAAGTACAGGAGGTGGCCCGGTGCCTGGGGGAGCTGTTGACTGCAGCCTGCTCTGGCAGA
Seq A exon
GCTCTGCCTTCGTCCTCTTTAGGGCCCCTGGGCCCTCCCTCACCCTCAACTCCAGTCTGGCAGCAACAGACCATCCTCATGCTGAAAGAACAGAACCGGCTTCTCACTCAG
Seq C2 exon
GAGGTGACTGATAAGAGTGAGCGCATCACGCAGCTGGAGCAGGAGAAGTCTGCACTCATCAAGCAGCTGTTTGAGGCCCGAGCGCTCAGCCAGCAGGATTCGGGACCTCTGGACTCCACTTTCATCTAGTTGGTTGTACCTCTCTAGGACAAGTGCACACAGACTTAGCTTCAGCTCCATGACACTGCCGGGAGCCTGTCTTCTGACTGAAGACCACCAGGGCTTAGACCTCAGAGCCCTCAAGGAGGCAGCTGCCTCCAGACTTGGGTGCTGCTAGAAATGTACTCTGCCGGAAGCTGCCACTTGCCACTGTCAGTGGGTGGCGGAGGATCATCCTCACGTTTACCTGATTTCAGGCAGCCCCTACAGAGAAGGGGGCATGTTTACGTCTGTCCTGATCCACCTGGCAGGGTTTCCTGGGATCACTGGCTTAGTAAAAAGTACTGGTCACACTGGGCTGTATTTCTCATAATGCCCAGCAGGGGCTGCTAGTTGAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026955-'8-12,'8-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.399 A=0.595 C2=0.262
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PD(34.5=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCAAAGTACAGGAGGTG
R:
GGCAGTGTCATGGAGCTGAAG
Band lengths:
255-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types