BtaEX0031367 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047807 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr11:106172390-106172938:+
Coord C1 exon
chr11:106172390-106172497
Coord A exon
chr11:106172583-106172693
Coord C2 exon
chr11:106172810-106172938
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTAACTGTGCCCCCCTGTAGGCT
3' ss Score
9.28
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACCTCGGGGCTGAGGGCAGCCCCCGCCTGCTGGGGCAGCTGCTGCCCAAGGTGCAGGAGGTGGCCCGGTGCCTGGGGGAGCTTCTGGCTGCGGCCTGTGCTACCAGG
Seq A exon
GCTCTGCCCTCGTCCTCCTCGGGGCCCCCTGGCCCTGTGTCACCCTCGGCCCCCAACTGGCAGCAGCAGACCATCCTCATGCTGAAGGAGCAGAACCGGCTCCTGACCCAG
Seq C2 exon
GAGGTGACCGACAAGAGTGAGCGGATCACACAGCTGGAGCAGGAGAAGTCTGCCCTCATCAAGCAGCTGTTTGAGGCCCGAGCCCTCAGCCAGCAGGACGCCGGGCCCCTGGACTCCACCTTCATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047807_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=0.676 C2=0.452
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PD(34.5=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCCCAAGGTGCAG
R:
ACATGAAGGTGGAGTCCAGGG
Band lengths:
196-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development