GgaEX0013313 @ galGal3
Exon Skipping
Gene
ENSGALG00000009060 | C9orf140
Description
NA
Coordinates
chr17:769217-773800:+
Coord C1 exon
chr17:769217-769318
Coord A exon
chr17:770574-770696
Coord C2 exon
chr17:771141-773800
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCACCCTCTTGCAGCCA
3' ss Score
10.3
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
Seq A exon
CCAGGGAACCCCACCTCAGCACTGAGCAGGCTGGCCCCCACTGCCCCTGCGGCATCCCCGGCCTCAGCAGGCACCCAGCAGGCCATCAACATGCTGAAGGAGCAAAACCGGCTTCTCACCAAG
Seq C2 exon
GAGGTGACTGACAAGAGTGAACGCATCACCCAGCTGGAACAGGAGAAATCTGCTCTGATCAAGCAGCTCTTTGAGGCACGTGCCCGCAGCAATCACGAAATGAACCAGCTGGACTCCACCTTCATCTAGCACCTGTCTCCCAGCACTCCTGGCCCCATATTGAGCTTCTCCAGGGGGTTGGTGGGGCTGGGGCTCTTGCCCTAAAACCATTCTGTCCATTACTCCAGGTGTTCATCTCAAGGCCCATGGAGGCCTGGAACTGCCTGTGGTGTCTCTGTGGGAGGCAGCTGGGGACAGTGCTTCCCTGACCCTGCTTGGGCAGGCCTTGGCAGTTCCCTCCCTGCCGTGCTGCTGCACGTGGCCGGCGGTGCTGCTCACAAGCTGCTCCTATTCTAAACTGACTGCAGTTGACTGCTCCCCCACCCCCTGACCCCCAGCGTGTCGGGTGGAAACAGCTGCTGCCCTTACTGTGTGAATGGGGAGAGGTGGGGAAGAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=0.951 C2=0.619
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PD(34.5=85.3)
A:
PF041087=APG17=PU(38.6=65.9)
C2:
PF041087=APG17=PD(58.6=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCCGAAGCTGCAGGAG
R:
AACCCCCTGGAGAAGCTCAAT
Band lengths:
242-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]