RnoEX6015831 @ rn6
Exon Skipping
Gene
ENSRNOG00000013069 | Sapcd2
Description
suppressor APC domain containing 2 [Source:RGD Symbol;Acc:1590629]
Coordinates
chr3:2595775-2596583:+
Coord C1 exon
chr3:2595775-2595882
Coord A exon
chr3:2595973-2596071
Coord C2 exon
chr3:2596149-2596583
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGACTCTGTCCTCCCACAGGTT
3' ss Score
12.42
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GACCTTGGGGCTGAAGGGAGCCCCCGCCCTCTGGGGAGGCTGCTGCCCAAAGTACAGGAGGTAGCCCGGTGCCTGGGGGAGCTGTTGACAGCAGCCTGTTCTGGCAGA
Seq A exon
GTTCCACCCTCGTCCTCCCCCTCAACCTCCCCCTCAACTCCAGTCTGGCAGCAGCAGACCATCCTCATGCTGAAAGAACAGAACCGGCTTCTCACTCAG
Seq C2 exon
GAGGTGACTGATAAGAGCGAACGCATCACGCAGCTGGAGCAGGAGAAGTCTGCACTCATCAAGCAGCTGTTTGAGGCCCGAGCTCTCAGCCAGCAGGATGCGGGGCCTCTGGACTCCACTTTCATCTAGTTGGTTGTACCTCTCTAGAACGAGTGCGCGCAGACTTAGCTCAGCTCCGTGGCGTTGCTGGGAGCCTGTCTTCTGACTGAAGACCGTCAGCTGGCTTAGACCTCAGAGCCCTCGAGCGGTGCTGCTCAGAGATGTGCTCTGCCTGAAGCTGCTACTTCCCCCCGTTGTGAGGAGTGAGTGGGGGAGGATCATCTCGTGTTTACCTGATCTCAGGCAGCCCGGCAGAGAGGGGGTATGTTTACAGCTGTCCTGACCCCTCTGGCAGGGGTCCCTGCGATCACTGGTGTTTAGTAAAAAGTATTGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013069-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.606 C2=0.238
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PD(34.5=80.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTACAGGAGGTAGCCCGG
R:
GAAAGTGGAGTCCAGAGGCCC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]