GgaEX0013313 @ galGal4
Exon Skipping
Gene
ENSGALG00000009060 | SAPCD2
Description
suppressor APC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28055]
Coordinates
chr17:387583-388937:+
Coord C1 exon
chr17:387583-387684
Coord A exon
chr17:388242-388364
Coord C2 exon
chr17:388809-388937
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCACCCTCTTGCAGCCA
3' ss Score
10.3
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACTTCCTCCCTGATGGCAGCCAGAGCCACCTGGGGCACCTGATCCCGAAGCTGCAGGAGGTGAACCGCTGCCTGGGTGAGCTCCTGTCAGCTGTAGGCAAG
Seq A exon
CCAGGGAACCCCACCTCAGCACTGAGCAGGCTGGCCCCCACTGCCCCTGCGGCATCCCCGGCCTCAGCAGGCACCCAGCAGGCCATCAACATGCTGAAGGAGCAAAACCGGCTTCTCACCAAG
Seq C2 exon
GAGGTGACTGACAAGAGTGAACGCATCACCCAGCTGGAACAGGAGAAATCTGCTCTGATCAAGCAGCTCTTTGAGGCACGTGCCCGCAGCAATCACGAAATGAACCAGCTGGACTCCACCTTCATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009060_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=0.951 C2=0.619
Domain overlap (PFAM):
C1:
PF114143=Suppressor_APC=PD(34.5=85.3)
A:
PF041087=APG17=PU(38.6=65.9),PF0497710=DivIC=PU(34.8=56.1)
C2:
PF041087=APG17=PD(58.6=95.3),PF0497710=DivIC=PD(62.1=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCTCCCTGATGGCAGC
R:
GTGGAGTCCAGCTGGTTCATT
Band lengths:
221-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]