MmuEX6099791 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26943877-26945927:+
Coord C1 exon
chr2:26943877-26943992
Coord A exon
chr2:26945442-26945560
Coord C2 exon
chr2:26945764-26945927
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACCTTGATCCTGTCCGCAGACC
3' ss Score
10.71
5' ss Seq
AACGTGAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
GAACCTCAAGCCTTCCAACATCGTCCTTGTTAACAGTGGCTACTGTAAACTGCAGGATATGAGCTCCCAGGCACTGATGACCCACGAAGCTAAGTGGAATGTCCGAGCAGAAGAAG
Seq A exon
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAGCTCTCAAATTCTCCTTCTCCACCAAATCCGACATCTGGTCTCTGGGCTGCATCATTCTAGACATGGCCACTTGCTCCTTCCTGAAC
Seq C2 exon
GACACAGAAGCCATGCAACTGCGGAAGGCCATCCGCCATCATCCAGGCAGCCTGAAGCCCATCCTGAAAACCATGGAGGAGAAGCAAATCCCTGGTACAGATGTCTACTATTTGCTTCTGCCCTTCATGTTGCATATCAACCCCTCCGATCGACTGGCAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'3-12,'3-10,13-12=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.036
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.7=100)
A:
PF0006920=Pkinase=FE(14.7=100)
C2:
PF0006920=Pkinase=FE(20.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCCAACATCGTCCTTG
R:
TGCAACATGAAGGGCAGAAGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types