RnoEX6016043 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5491548-5493653:+
Coord C1 exon
chr3:5491548-5491663
Coord A exon
chr3:5493187-5493305
Coord C2 exon
chr3:5493490-5493653
Length
119 bp
Sequences
Splice sites
3' ss Seq
CACCTTGATTCTGCCCACAGACC
3' ss Score
9.73
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
GAACCTCAAGCCTTCCAACATCATCGTCATTAACAACAGCTACTGTAAACTGCAAGACTTGAGCTCCCAGGCACTGATGACCCATGAAGCCAAGTGGAATGTCCGAGCAGAAGAAG
Seq A exon
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAACTCTCAAATTCTCCTTCTCCATCAAATCCGACATCTGGTCCCTGGGCTGCATCATTTTAGACATGGCCACGTGCTCCTTCCTGAAT
Seq C2 exon
GACGCAGAAGCCATGCACCTGCGGAAGTCCATTCGCCACCATCCAGGCAGCCTGAAGCCCATCCTGAAAACCATGGAGGAGAAGGAAATCCCTGGTACAGATGTCTACTATTTGCTTCTGCCCTTTATGCTGCATATCAACCCCTCTGATCGACTATCAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(14.4=100)
A:
PF0006920=Pkinase=FE(14.4=100)
C2:
PF0006920=Pkinase=FE(19.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTCCAACATCATCGTCA
R:
TGCAGCATAAAGGGCAGAAGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]