MmuEX6101123 @ mm10
Exon Skipping
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48917165-48929729:-
Coord C1 exon
chr2:48929681-48929729
Coord A exon
chr2:48927096-48927247
Coord C2 exon
chr2:48917165-48917338
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCTTTTTTTAGGTG
3' ss Score
13.56
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTGCAAAAAG
Seq A exon
GTGACCGGACTAGCAGTTGCCCAGTGATCTTCATACTGGATGAATTTGATATTTTTGCTCATCAGAAAAATCAAACACTCCTTTATAATCTTTTTGACATTTCTCAATCTGCACAGACACCAGTAGCAGTTATTGGACTTACATGTAGATTG
Seq C2 exon
GATATTTTGGAACTCTTAGAAAAGAGAGTGAAGTCACGATTTTCTCACCGGCAGATACATTTAATGAATTCATTTGATTTTCCACAATATTTGAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAATTCCCAGATAAGGCTTTTGCTGAGAGATGGAATGAGAATGTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761-'21-27,'21-21,26-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(10.4=100)
A:
PF131911=AAA_16=PD(28.6=86.3)
C2:
PF146291=ORC4_C=PU(14.1=46.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTTTGCTGAAAACCTT
R:
ACATTCTCATTCCATCTCTCAGCA
Band lengths:
219-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types