HsaEX0044839 @ hg38
Exon Skipping
Gene
ENSG00000115947 | ORC4
Description
origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
Coordinates
chr2:147948051-147955395:-
Coord C1 exon
chr2:147955347-147955395
Coord A exon
chr2:147952373-147952524
Coord C2 exon
chr2:147948051-147948224
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTATTTTATCTTAGGTG
3' ss Score
8.72
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAAGCTTTGCTGAAAACCTTTCATTTCTTCTGGAAGCTTTAAAAAAAG
Seq A exon
GTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTTTTGCTCATCATAAAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAATAGCAGTTATTGGTCTTACATGTAGATTG
Seq C2 exon
GATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCAAGATTTTCTCACCGGCAGATACACTTAATGAATTCATTTGGTTTTCCACAGTATGTTAAAATATTTAAAGAACAGTTATCTCTACCTGCAGAGTTTCCAGACAAGGTTTTTGCTGAGAAGTGGAATGAAAATGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115947_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=PD(11.2=70.6)
A:
PF131911=AAA_16=PD(28.4=86.3)
C2:
PF0000424=AAA=PD(16.7=32.8),PF146291=ORC4_C=PU(14.1=46.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTTTGCTGAAAACCTT
R:
ACATTTTCATTCCACTTCTCAGCA
Band lengths:
219-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development